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Hi there,
I'm running a pangenome analyisis on 20 bacterial strains using roary version 3.13, on a server running CentOS 7.
I want to get the unique genes present in only one of those 20 strains b…
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The [recently contributed correlation matrix function](https://github.com/IBT-FMI/SAMRI/blob/8143d761135a66f802aff6120589352932a1ad8f/samri/plotting/examples.py#L312) seems to not work properly. It pr…
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`ami` now carries out most of the required task and its my intention to prototype and test the full functionality in the next few days.
The result of running `normami` will be a large `CTree` and a …
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Hi André,
I have also came across problem when running the pipeline. I have downloaded the processed data from zenodo.
The directory structure is subfolder_per_sample. For example, in the proce…
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### Description
Clocked variables are only defined when the corresponding clock is active. However, they are currently plotted and saved as discrete variables, which are defined for all values of t…
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Categories are duplicated upon import, and an error is thrown when importing from CSV.
**To replicate:**
* Create a product with multiple child categories on a secondary test site.
* Make sur…
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Hello,
I try to run SNV-DA on my 40 samples, while the first 20 samples are in group 1 and the last 20 samples are in group 2. I created the variant files manually in the format requested.
I used thi…
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I think it is sourcing from RetinaNet-testing-on-video(For counting).ipynb file because it is renaming different from sample_annotations.csv
Traceback (most recent call last):
File "/content/Sper…
ghost updated
3 years ago
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