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We've been talking about redesigning how we store standoff in RDF, to make it flexible enough to meet the needs that different projects have described to us.
### Requirements
- Users can create differ…
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This issue was created in order to define a continuous data message type.
Continuous, or signal data, associates a value with sequence base pairs. This can be raw experimental data, such as ChIP-Se…
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Improve the definitions of the Constraint Names and Comments for clarity and consistency, and to enable processing (such as to indicate which variable to compare) with guidelines in the comments.
B…
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Hello,
While testing ReGaTE with the new bio-tools, I noticed that there is currently:
- no check on the term labels which are pushed in a json description to bio-tools
- no server side handling to fi…
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I just learned that there are controlled values in ZDB data for frequency information. I will investigate this so that we can also add this to the RDF.
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Suggest new lesson categories to replace the current ones:
- Acquiring data
- Transforming data
- Analyzing Data
- Presenting Data
- Sustaining data
That way readers arriving at the lessons page can …
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Dear owlapi developers:
As far as I can tell, InferredOntologyGenerator.fillOntology() is the most time-consuming step in OWLAPI. Yet, there is no way for users to monitor its progress and estimate …
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howler here spotted by @selewis:
```
[Term]
id: GO:0075259
name: spore-bearing organ development
namespace: biological_process
def: "The process whose specific outcome is the progression of a spore-b…
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chromosome organzation is linked through is_a
histone H4-R3 methylation
histone H3-S10 phosphorylation
histone H4-K8 acetylation
which seems incorrrect. The problem may be at
chromatin modification
…
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Determine and document when and how to do a release.
See discussion on #50, specially https://github.com/duraspace/pcdm/pull/50#issuecomment-211630172 and below.