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Hi @FrederickHuangLin et al.
Thanks for developing this updated ancombc2 package! However, I have an issue with the struc_zero argument.
When I run the following code, no error message occurs:
…
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Hi, @FrederickHuangLin et al.
Thanks for developing this updated ancombc2 package!
However, I have one question.
Is there any way to test Paired-samples with ANCOMBC2?
Best regards.
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Hello,
I used ancombc2 function and specified that I want my data to be analysed at the genus level. my code is as such:
output = ancombc2(data = phyloseqobject,
tax_level = "G…
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Hi Frederick,
I have been trying out your ANCOM-BC2 package and want to congratulate you on this great microbial analysis tool!
I do have one question regarding interpretability of the various …
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Dear Dr. Huang Lin
Many thanks for your great job and for the latest updates in ANCOMBC2. I sincerely find this tool the most comprehensive and versatile available for longitudinal compositional da…
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Hello,
There is an initiative to support Linux ARM64 for Bioconductor.
While testing the packages we faced this failure:
```
biocbuild@kunpeng1 ~/git> R CMD check ANCOMBC_2.1.3.tar.gz
* usin…
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Hello there,
I keep having an issue where, when I include `rand_formula` when running `ancombc2`, I receive the following warning several times:
`In lme4::lmer(formula = tformula, data = df, con…
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Hi Huang,
thanks for this enhanced version of ANCOM-BC. I'm trying to include the ANCOMBC's methods on the Bioconductor package named `benchdamic` for benchmarking purposes. Since my aim is to run ma…
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Dear author,
i have a dataset with 4 groups, each patient has a baseline and a follow-up fecal sampling. Thus, I implemented the ANCOM-BC2 model via `ancombc2` with "Timepoint + group" as fixed fo…
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Hi,
I have previously been using ancombc, however, decided to try ancombc2 for longitudinal analysis.
I keep getting this error: "No variable named X in the reference grid", despite me clearly…