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EstimateModel and EstimateContrast bricks need to be improve in order to be universal and to work with all fMRI data
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Hi,
I built a new casa (5.3.19), everything went fine for the steps : sources, configure and build.
To configure nipype with SPM12 standalone, the function `capsul.capsul.in_context.nipype.configu…
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**Describe the bug**
```
Traceback (most recent call last):
File "", line 1, in
File "/casa/install/python/capsul/process/process.py", line 744, in run_from_commandline
result = …
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While instantiating the workflow for the Morphologist or FakeMorphologist pipeline, I get:
```
Traceback (most recent call last):
File "/casa/host/src/capsul/capsul/test/test_fake_morphologist.py…
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As I said in the last meeting, unless I am mistaken, currently if the user does not export the output of a brick/node, that brick/node is automatically disabled (carpetparcellation).
![Screenshot f…
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**Describe the bug**
Sulci recognition with Deep CNN crashes on some datasets. On the 1558 hemispheres that I processed today, 91 exhibited the crash.
Testing on one of the faulty hemispheres sh…
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Currently, if the environment variables for FreeSurfer are set in the shell used to start Mia, it seems that calculations using FreeSurfer do not work.
In the .bashrc file, we need to comment out t…
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Add flake8 checks, Travis tests, possibly protect `master` branches.
- [x] [casa-distro](https://github.com/brainvisa/casa-distro)
- [x] [brainvisa-cmake](https://github.com/brainvisa/brainvisa-cm…
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Most of the tests are currently broken due to the heavy works on the new API and implementation.
A few tests have been repaired, then broken again several times, because as the general tests do not p…
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There are some major changes that are ongoing in Controller. With the need to get rid of `StudyConfig` class, this will imply a major change in Capsul API. This issue is here to centralize all the com…