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I am trying to run the ExampleFly pipeline as code same as in the examples but failing with AssertionError: Feature ImageSet_ImageSet for Image does not exist. It does pass the first two modules and c…
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After merging #127 we should look into #101 again. Reason: The tag statistics look different, after data cleaning.
It might also be cool to have the tag statistics on our website, e.g. as a word c…
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When you are doing adaptive thresholding with a 3 class thresholding (see attached pipeline + 2 example images), if your adaptive window is relatively small, you can end up with some windows that do n…
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The Os X prebuilt binary does not run on some systems. It seems to be missing a library that should be included in the release.
The error message is:
`ImportError: dlopen(/Users/jarno/Desktop/Cell…
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Hi!
I just downloaded the histoCAT_1.74_Windows10 version of histoCAT on my Windows 10 computer. I created object masks as previously done at my institution through CellProfiler to plug into histoC…
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redirect from https://cp-website.github.io/imaging-flow-cytometry/ to http://cellprofiler.org/imagingflowcytometry/index.html
@mcquin I'm not sure about how to do this/ if it's possible... Can you o…
N3llz updated
7 years ago
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Load this: http://imagewebrhel6/batchprofiler/cgi-bin/NewBatch.py?email=dlogan@broadinstitute.org&queue=short&priority=100&project=imaging&batch_size=10&memory_limit=2000&revision=2.1.1&data_dir=/imag…
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Please include all requested information- reports without specification of OS/Version information or without SPECIFIC information on how to reproduce may be closed without investigation. You may delet…
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- [ ] Upload the images (ideally to the [IDR](https://idr.openmicroscopy.org/about/)).
- [ ] Upload the raw cellprofiler measurements used in the gradient-boosting directory. These are still fairly…
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Currently we are running queries to get possible labels for MetaData columns when choosing them from a filter. However for very large image sets, this causes CPA to freeze when creating a new filter b…