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**Bug Description**
Plugin citation titles become capitalized (and subsequent letters lowercase) in the plugin API documentation, even if the titles should not be capitalized (or all caps). This is n…
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I'm investigating biofilms living on plastic debris. I want to find out if there is differential expression of certain KEGG Orthologs (KO) at week 0 and week 7 of my microcosm experiment (as well as b…
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the package dada2 must be loaded before the pipeline, otherwise filterAndTrim will not found
same for Biostrings, otherwise DNAStringSet not found. These packages are not in the documentation
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I have a problem with **dada2** rebooting my system when trying analysis with the **PR2** database.
My system info:
OS: Ubuntu 23.10
Hardware: HP HP EliteBook 840 G4
Processor: Intel® Core™ i7-7…
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Hello. I'm having a problem trying to trim my primers from my interleaved fastq files (R1 and R2 reads have already been merged into each sample file).
I am using Windows Linux Bash Systems, cutada…
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Hi @benjjneb,
Thanks for your efforts developping dada2 which contributed to revolutionise the analysis of 16S data.
We are working on the dynamic of fecal microbiota using in vitro systems and …
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I received my paired end ITS fastq files as demultiplexed, and merged files with both forward and reverse reads together per fastq file.
I have modified the dada2 ITS pipeline a bit to reflect this…
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See dada2 tutorial and ampliseq output
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Situation: I run `assnake result dada2-filter-and-trim --preset def -d $DNAME gather -j 50 --run`
It returned the result I was not pleased with. I changed a preset and run again. Then, I realised, th…