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Hi,zqfang.
Thanks for your GSEApy that i'am looking for There are some questions while i am using it and hope that you could help.
1. I calculated test data (P53.txt) by c1.hallmark.gmt and signalto…
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Hello there,
I keep having an issue where, when I include `rand_formula` when running `ancombc2`, I receive the following warning several times:
`In lme4::lmer(formula = tformula, data = df, con…
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Hi team
Thank you so much for ANCOMBC2 and the updates regarding pairwise testing.
My aim is to compare 6 groups together (M,V,MM,VM,MMV,VMV) in a pairwise form and see the differentially abund…
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add individual functions to tcsh scripts (setup, uncorrected, fwer corrected, etc)
run test on all specified ROIs
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For this 2-family parallel gatekeeper with Hochberg truncated at: 0.5 in the 1st family and 1 (classic) in the 2nd family:
![obraz](https://user-images.githubusercontent.com/60151643/219379976-7a74…
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Hi,
```py
import marko
marko.parser.Parser().parse_inline('*vbdfgd* dsfjfio sio `dsfs fwer `')
```
leads to:
```py
File ~/.../python3.10/site-packages/marko/inline.py:107, in LinkOrEmph.__n…
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Thank you very much for the detailed tutorial you put together for ANCOMBC2. I have a quick question regarding the trend test with 5 ordered categories (A,B,C,D,E). I would like to test for a monotoni…
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Hi!
I have a very simple dataframe:
```
test = pd.DataFrame({'a': ['direct','social','search'],
'b': [69.109638,70.042078,68.576701]})
```
I get this error when running t…
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Prob a lot of people will know one or both, so good to at least introduce the idea of adaptive FDR
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Enriched terms seem fine. However, gene list in the resulting csv (Lead_genes) and heatmap are weird only when permutation_type = gene_set.
```
Name,Term,ES,NES,NOM p-val,FDR q-val,FWER p-val,Tag …