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I am currently trying to run STAR Fusion on a remote server within a conda virtual environment and i have installed star, star fusion, samtools, the following perl modules through conda install as spe…
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Currently `gpu_temp` seems to be reading `edge` sensor value in case of AMD GPU. It would be useful to have access to more sensors, such as `junction` or really any lm-sensors sensor that's available …
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Hi! Thank you for your tool! I'm new to rMATS and now working on the version 4.1.1. I hope to process one single bam file and get the "Inclevel1" for further analysis, so I use `--statoff` and my code…
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BPO | [23407](https://bugs.python.org/issue23407)
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Nosy | @tjguk, @zware, @eryksun, @zooba, @jamercee, @efahl
Dependencies | bpo-29248: os.readlink fails on Windows
Files | [issue23407.patch…
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(Still) having an awesome time following along the tutorial, thank you so much for writing it!
Section 4.3 got me confused. For context: I've heard of BSP before, but never implemented one / looked…
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Hi,
Thanks for the creation of rmats-turbo - it works like a charm!
I would like to visualize SE, RI, A5SS & A3SS events of a single sample, would you mind giving some quick feedback on whether …
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The `fit_average_densities` command takes an indirect input which is `realigned_slices_ccfv2.json` via `fit_average_densities_ccfv2_config.yaml ` (see https://github.com/BlueBrain/atlas-densities/tree…
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### Is there an existing issue for this?
- [X] I have searched the existing issues and checked the recent builds/commits
### What happened?
I have created symlinks to the model files in the m…
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Error, no seek pos for acc: 10_GL456015_alt at /home/tej/envs/DeepMod/anaconda3/envs/starfusion/lib/STAR-Fusion/FusionFilter/util/../lib/Fasta_retriever.pm line 71, line 214623852.
Fasta_retriever:…
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I think that the control is the best. How to generate the gtex_ctrl_db and tcga_matched_control_junction_count.h5ad, Maybe a number of *.fasq in tcga and GTEx analysed by SNAF first?