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When MCMC/CD/SAN/etc. total step count (i.e., sample size * interval) exceeds the maximum signed integer value (2147483647), it produces a signed integer overflow resulting in funny diagnostic output …
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I come from the python astronomy community which includes an MCMC inference tool called the Ensemble Sampler ([code](https://github.com/dfm/emcee), [paper](https://arxiv.org/abs/1202.3665)). Dan has s…
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As requested on the Slack I am posting my perspective as to how the docs could be improved.
The below is not complete, but these are the issues that I have come across when trying to implement an …
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I'm not sure whether this fix should go in `openmmtools.mcmc` or here in YANK, but to avoid the issue where velocities are left at zero when sampler states are restored from disk, we should reassign v…
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Hi JASP Team,
Would it be possible to implement brms in JASP for Bayesian modeling within JASP? The No U-Turn Sampler (NUTS) for MCMC is extremely fast and efficient and the brms front end to the Sta…
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**Issue by [bob-carpenter](https://github.com/bob-carpenter)**
_Wednesday Oct 23, 2013 at 18:18 GMT_
_Originally opened as https://github.com/stan-dev/stan/issues/318_
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We can't get new patches…
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**Issue by [bob-carpenter](https://github.com/bob-carpenter)**
_Wednesday Oct 23, 2013 at 18:18 GMT_
_Originally opened as https://github.com/stan-dev/stan/issues/318_
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We can't get new patches…
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**Issue by [bob-carpenter](https://github.com/bob-carpenter)**
_Wednesday Oct 23, 2013 at 18:18 GMT_
_Originally opened as https://github.com/stan-dev/stan/issues/318_
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We can't get new patches…
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Hi,
I am Taraka a post-doc working with linguistic phylogenetics. I implemented my MH sampler for sampling trees and other model parameters.
My code which runs mcmc process is here:
https://gith…
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Something I often find useful when writing my own samplers is to write the output directly to disk in a streaming (on-line) fashion.
It might sound silly, but I've worked in places where forced sy…