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I am trying to predict interactions between microbes using the simulatePairwiseInteractions function with my models created through CarveMe.
I modified the 'HighFiberDiet_Oxygen' condition provided …
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At first glance, this might seem like biosynthesis and catabolism would be disjoint, however I don't think this is always true. It seems to me that it would be valid to have a process that catabolizes…
ukemi updated
4 years ago
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Can you talk a little bit about the pros and cons of each and in which kinds of situations/applications one would be more useful than the other? Like why pick one over the other if you had to pick?
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I said I would start to submit terms to be flagged "not for direct annotations" as it should always be possible to be more specific.
Here is the first batch.
We plan to do this in stages. These ar…
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Hello
I am trying to build a pregnancy model that I started in PK-Sim, sent to MoBi
Then in MoBi I did the following all the steps advised in "Applied Concepts in PBPK Modeling: How to Extend an O…
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This step is to provide a ground state assessment of what pathways for orthology projections look like that are imported from Reactome. Decisions to be made:
- [x] which species?
- [x] All pathways o…
ukemi updated
11 months ago
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In input files, reactions are usually given in millimole per gram dry weight per hour (mmol / gDW / h).
The given unit needs to be decomposed into its parts:
- The extent unit mmol / gDW that charact…
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http://noctua.geneontology.org/editor/graph/gomodel:5b91dbd100000065
In this model, I'm trying to state the MF occurs_in the GO:0005775 vacuolar lumen as an an extension (in Protein2GO under PMID:…
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#### Problem description
> With the memote API it would be quite simple to integrate memote into a pipeline that automatically addresses erroneous test results. There is a plethora of tools availab…
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Hi Alejandro,
I though you might be interested in this seeing your list of Julia packages:
https://github.com/rafaqz/Photosynthesis.jl
Its a rewrite of Maespa/Maestra in Julia, minus the spat…