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The BiGG Recon3D model has
Metabolites | 5835
Reactions | 10600
Genes | 2248
whereas the paper reported:
> 3,288 open reading frames (representing 17% of functionally annotated human genes)…
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## Movivation
Adding reactions to MADRID can be tedious, because specific reaction names are required.
It would be beneficial to be able to include a common name (i.e., L-glutamine, glutamic acid…
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Hello!
I'm a graduate student doing research with FID-A. I need more metabolites (Acetate (Ace), Myo-Inositol (mI), ATP, Ethanolamine (Eth), Pyruvate (Pyr), scyllo-Inositol (sI), and Threonine (Thr))…
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Hi all,
As a long-time user of MAVEN, the natural abundance correction option never seemed to actually alter the CSV output from any list of defined metabolites. I was wondering if you were aware o…
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_From @zakandrewking on June 28, 2017 22:4_
Hi All:
I hope this is not a rehash of a previous conversation, but I could not find it, so here we go :)
Can we support non-integer charges in SBML …
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# Description of the issue
Some metabolites have a weird formula:
- rdxo -> Fe1S0
- rdxr -> Fe1S0
- rbrdxOX -> UK
- rbrdxRD -> UK
UK means maybe unknown ?
Fe1S0 look…
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# Description of the issue
I believe the HMDB ID for this metabolite should be HMDB00124 (http://www.hmdb.ca/metabolites/HMDB0000124). The current one, HMDB03971, maps to Beta-D-Fructose 6-phosphate.…
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### Description of the issue:
According to memote report, stoichiometric concistency is one of the lowest scores of the model, and thus one obvious task for further improvement. This inconcistency is…