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Hi,
Recently, i predicted genes using PASA. I fould some genes that were overlapped.
```R
## gene1
ctg007940 transdecoder gene 152807 155627 . - . ID=GENE.asmbl_10…
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Hello,
Enformer looks great to predict gene expression. Is there a piprline to run Enformer?
` I have another question. I have many DNA sequences with different length. Now I want to know …
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Hi, in the model fitting step, I notice that there is a problem:
```
---------------------------------------------------------------------------
ValueError Tracebac…
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Hey,
To visualize predicted gene expression, I run novosparc.pl.embedding(dataset_reconst, pl_genes) after defining a 3d target space
and finding the probability space for each cell. This, howeve…
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Using [a curated dataset on interaction data on budding yeast](https://downloads.yeastgenome.org/curation/literature/interaction_data.tab) , try to predict the type of interaction two genes share (syn…
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as above, i hava a predicted table related KEGG genes, how could i calculate the gene family using scripts pathway.py?
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**Hello Scenic developers,
I wanted to express my gratitude for creating such an amazing tool. I've used SCENIC to analyze single-cell data that we're interested in incorporating into our Nextflow …
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Hi,
I am testing GeneMark-ETP on fungal genomes. Haven't been successful. Does this work on fungi yet?
The error I get is
```
### create RNA-Seq hints ... done
### predict genes gmst
### pr…
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Thanks for the tool it sounds very useful! I want to use it to annotate the viruses I find in my metagenomes but I have a few questions concerning the use of the tool:
1) In the literature (example…
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As stated in [diamond.py](https://github.com/chklovski/CheckM2/blob/d40aef910f24bf7e479e5f7ff1ed326f30d2884b/checkm2/diamond.py):
> Diamond only accepts single inputs, so we concat protein files a…