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Internally in golr the subject of an annotation is the bioentity. The value can be gene, protein, other gene product, complex. We need a standardized label for this -see #194.
`Gene/product` is what …
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I executed the following command in a container created from the provided Dockerfile:
```bash
micromamba run -n diffdock python -m inference --config default_inference_args.yaml --protein_ligand_c…
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this is a fun one, here's the error:
```
Traceback (most recent call last):
File "/home/paynea/miniforge3/envs/asapdiscovery/bin/asap-docking", line 8, in
sys.exit(docking())
File "/lila…
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In this model
The phosphorylation status of rec8 is important (in this case ([Phos:(S450),UnPhos(S412)](https://purl.obolibrary.org/obo/PR_000050512))
In PRO this has a short label
PRO-Sho…
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I'm attempting to generate predictions for multimeric complexes, where one chain is a chimeric/fusion protein and has components from different organisms. About ~85% of this chain is from one organism…
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We will want to support mutations of proteins (and other targets like RNA). I am not sure if we want to support this via a mapping method, or have something simpler like a residue ID and then the amin…
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[Kollman, Peter A., Irina Massova, Carolina Reyes, Bernd Kuhn, Shuanghong Huo, Lillian Chong, Matthew Lee, et al. “Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Me…
cramg updated
3 years ago
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Hello,
I am using a bash script running the diffdock comparing the results with autodock gpu but I am getting the following error, can you please let me know how I can solve this.
Thanks,
Amir
…
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**Description:**
- DeepChem Version: 2.1.1
- Platform: Linux Mint
I tried the dc.molnet.load_pdbbind(), according to the tutorial.
Then, some error came out. (Unable to add hydrogens mat…
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Can we allow for ‘anatomical entity’ to be a top-level defined class (i.e., at root), but it is defined (i.e., equivalence axioms) in terms of other COB classes, such as material anatomical entity an…