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I am trying to look for over representation of GO terms in my Arabidopsis dataset. I have one background AGI set and 3 foreground AGI sets.
I can successfully use the Parent-Child Intersection approa…
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# DeepScore: Community curated scoring, supercharged with AI
(Image taken f…
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# Title
Exploring and solving functional analysis gaps in metaproteomics.
# Abstract
Metaproteomics, the study of the full protein complement of microbial communities, is becoming an increasi…
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### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
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To connect the PASS1B-06 DEA results data to the phenotypic data, we need to map each unique `feature_id` (present in the DEA results) to a list of associated `vial_label` (present in the phenotypic d…
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Hi,
Thank you for the great tool!
When running the same analysis one two different computers the number of identified proteins changed a lot. This trend was observed repeatedly, one computer al…
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#### What analysis module should be updated and why?
https://github.com/d3b-center/OpenPedCan-analysis/tree/dev/analyses/data-pre-release-qc
We are adding new file types in V16 and need to add…
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Greetings,
I am a new user to nf-core and currently trying to establish nf-core proteomicslfq pipeline on my personal local PC. Unfortunately, I am facing error with search engine comet. I have att…
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Hi Phil,
I am starting to use PAW pipeline in my TMT studies. The transparency of the workflow and the flexibility is awesome! Although I am not acquainted with Python scripts, I think it is possible…
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Hi,
How is the Q.Value in the report.tsv calculated?
I noticed across multiple experiments that the Q.Values have a strange distribution. For instance, I searched the "RD139_Narrow_UPS1_25fmol_inj…