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Currently, the DAG in `replex.py` does not seem to implement the REXEE workflow implemented in `ensemble_md`. Specifically, in the `ensemble_md` implementation, the workflow of a REXEE simulation is a…
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### Version
1
### DataCap Applicant
004
### Project ID
004
### Data Owner Name
ABGA
### Data Owner Country/Region
Singapore
### Data Owner Industry
Web3 / Crypto
### Website
https://www.a…
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We have been setting include_torsion_forces to false when building to get around this, and then including them for the simulations. Figure out why it doesn't work in the random builder.
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At some point, we should look into plugging accelerated MD into our repex code. This could be useful for general enhanced sampling.
The current AMD code is built using a CustomIntegrator, so it migh…
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Hi `alchemlyb` developers,
I was running a Hamiltonian replica exchange simulation of 140 states, with the first 4 states being the coupled states (\lambda_{coul}, \lambda_{vdw}, \lambda_{restr}) = (…
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So Realm of Heroes was released in kunark:
https://everquest.allakhazam.com/search.html?q=realm+of+heroes
seems that in 2001 for one of the fanfairs a guild won and got a reward via this, as wel…
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Hi there,
I'm running YANK with many thermodynamic states (500 states) and found the calculations were really time-consuming. The default_nsteps_per_iteration is 500, default_timestep is 2.0 fs, an…
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Hi my Neon Exchange wallet has been compromised, i had 32 Neo and 3.3 Gas within the wallet, i downloaded the NEX wallet extension via chrome i filled out my encrypted key and password, i then logged…
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#### Is your feature request related to a problem? Please describe.
Yoda v1.9.0
The collection/data object browser table presents limited information
 data (positions, box vectors) needs…