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Hello,
Can the same pipeline be used for cDNA sequencing as well? I have the fastq reads and the reference genome and transcriptome fasta sequences.
Thank you.
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_From @harisaamin on January 25, 2017 15:27_
17: open_data_df = pd.read_excel(ATTENDANCE_DATA_FILE, 0, index_col=None, na_values=['NA'])
18: cplc_data_df = pd.read_excel(CPLC_DATA, 'Combined 2013', …
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In world, navigation and integration tests, the order of the dependency loading is causing errors a certain percentage of the time; it occasionally requires up to 8 refreshes of the page before it ini…
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Hello,
I have a question regarding the use of DeepSignal2 on the new version of nanopore sequencing. Since the sequencing data is no longer in the fast5 format, but in the pod5 format, I would like …
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# How to work with duplicate sequencing?
## Duplicate sequencing
In the DKTK Master programme, patients are sometimes sequenced several times, apparently from the same tumor sample (according to…
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Search SRA
"oxford nanopore"[Platform] AND mus musculus[Organism] AND "genomic"[Source]
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The `round.seq` field is a hangover from when Tabbycat didn't support break rounds. When we added break round support I think we sort of defaulted to just keeping rounds in "sequential order". For a c…
czlee updated
7 years ago
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## Reason
My motivation is for solving variational inequality problems, but as @fdkong points out grid sequencing can be generally useful for solving highly nonlinear problems. For VI problems, as no…
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I wanted to sequence 2 controllers so that the second ran after the first was completely drained (to be able to send finalizer signals down the shute etc). I found myself digging into the core librar…
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Need a tool to handle dark sequencing (single end, but the first 3 bases of R2 need to be prepended to R1).