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This issue covers two situations when attempting to install or update a tool:
- If the requested version is no longer installable then installation will fail (i.e. `nebulizer install_tool` will do not…
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History: http://www.proteore.org/u/yvdb/h/ovariancortex
Version tool used: Venn diagram [JVenn] (Galaxy Version 2021.05.12)
Same bug observed using Venn diagram [JVenn] (Galaxy Version 2020.01.10)
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have a working outline of the index.html. Maybe in the header it will say something like welcome to your Toolshed, which we'll be our corny way of saying you're logged in.
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20.09 Galaxy - warning to anyone trying a fake authentication id like 'fakekey' in the toolshed.
If I hack the toolshed api key (e.g. for docker...) to the imaginative 'fakekey' value, things brea…
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In the IUC tool developers best practice guidelines https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/tool_xml.html#tests we stress tools should have tests, and encourage this with …
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I'd like to be able to use the following 2 tools from the tool shed on my Usegalaxy server.
prinseq: https://toolshed.g2.bx.psu.edu/repository?repository_id=c10af0ee960b15be
ea-utils: https://toolsh…
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Error:
tool id: toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.2.2
tool version: 1.2.2
## job tool version:
job command line:
## None
job stderr:
python: can't open file '/galaxy/main…
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It appears tools are not created or updated in the ecology section of main toolshed tools. Any idea @bgruening ?
Will try to look at gh actions reports as it seems that info has to be there ;)
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The tool Bracken fails with the following error:
>> Checking report file: /data/part0/000/855/dataset_855987.dat Traceback (most recent call last): File "/usr/local/bin/est_abundance.py", line 529,…
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The latest release of the gops subtract tool available in the toolshed doesn't work because of missing utils dependencies. The older version installed by suite_gops does work, however.
It's just a g…