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Perform empirical analyses of BMI on a range of disease outcomes in UKB europeans and BBJ
- Perhaps do this in a vignette
- Or do it in mr.trans repository
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Hi, I am trying to run GEM analysis, but it keeps showing an error about phenotype file. I have attached my code here. Do you know what is my problem here?
singularity exec \
> -B /humgen/ManningL…
lc491 updated
5 months ago
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Hi, It would be very nice to add a guide on LDpred-funct, and SbayesR, which are popular as well.
Also, it would be good to show how to generate PRS for UKB data (500,000 samples) with millions o…
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https://github.com/pystatgen/sgkit/blob/f2567cb236f135d34a6b1ce34f16da3d690a009a/sgkit/io/bgen/bgen_reader.py#L427
This should be something significantly lower. 500MB-1GB is what I had to use to m…
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UK Biobank Pharma Proteomics Project (UKB-PPP) is described in this paper https://www.nature.com/articles/s41586-023-06592-6 . Among the analyses presented there is an association analysis between pr…
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See title.
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Dear author,
Hope this issue alert finds you well.
I am running the function read_ukb_tabdata(fukbtab,dfhtml,fields_to_keep = baseline_fields) to extract the variables following the code:
bas…
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Create main SPM12 toolbox with:
- [ ] toolbox configuration file (including test for CAT12)
- [x] main bone processing batch
- [ ] HTML overview with basic information as some poster-like X-bone d…
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https://arxiv.org/pdf/1503.01655.pdf
In dictionary bulding section, I didn't find a description about how you deal with the multi-word expressions. How the tokenization and preprocessing of the …
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Missing a system dependency? Might be able to circumvent this with one of the `echotabix` alternatives:
https://github.com/RajLabMSSM/echolocatoR/actions/runs/3357812148/jobs/5563951744#step:21:1
``…