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Hi,
I compared the results that I obtained using vibrant contigs before and after running phamb using checkv
Before
|checkv_quality |n| mean |sum |max|
|---|---|---|---|---|
|Complete |557 |46…
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It is often the case that the strong Si I 1082.7 nm line is observed along with the He I 1083 nm line. The line core forms in the NLTE condition as discussed in several papers but nevertheless it is o…
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I have run decontam on a data set that has ASV’s for tumor tissue, negative controls, and control tissue. The negative controls did not have any tissue but only reagent. The controls are non-tumor spe…
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Hi,
What is the expected unique alignment %? For example, for NEB EM-seq libraries, I'm seeing only 60 - 75%, which seems low to me. This is with max insert size set to 1000.
gevro updated
3 weeks ago
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We currently do not have any functions to remove contaminated individual based on GTscore `conScore`. I propose that we create 2 functions:
- [ ] `find_ind_con` - reads in `conScore` from GTscore s…
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Sgr_A_st_i_03_TM1
[uid://A001/X15a0/Xd0](https://almascience.org/aq/?result_view=observation&mous=uid://A001/X15a0/Xd0)
* [x] Observations completed?
* [x] Delivered?
* [x] Downloaded? (specify where…
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Hi,
I have a slightly unusual problem, based on a misunderstanding by a collaborator on how das_tool works. I was wondering if you could give your opinion on what the result of the methods they hav…
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Hi!
I am trying to use this package to remove as much contaminants as I can from an already cross contaminated samples.
For context, this data comes from NovaSeq sequencing, so I am working with E…
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Hello,
I want to update the new version, but I can not see how to QC when running only the script without tracking the database. I want to use this as an older version (FastQC and Samtools QC). Pleas…
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Minerals are non-renewable resources, and the management of these resources is crucial for a nation’s geopolitical power. Efficient exploration, processing, and extraction operations are vital, necess…