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### Schema vs ontology
linkml wants to be a schema development framework, not for ontologies. Right now I think this is mostly reflected in some aspects of data structure declarations, e.g. object …
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I feel like we might benefit from moving to having a LinkML Schema for the QC report that we can then use in both the QC report generation and the use of that report in Monarch-QC or other places.
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There is a `Dockerfile` in the root folder of the repo. It contains:
```dockerfile
FROM python:3.9
ADD . /src/
RUN \
pip install poetry && \
cd /src && poetry install
```
Othe…
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```sparql
PREFIX rdfs:
PREFIX linkml:
PREFIX nmdc:
PREFIX skos:
select
?s ?mapping_pred ?o ?l
where {
graph linkml:meta {
?mapping_pred rdfs:subPropertyOf* skos:mappingRelati…
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- [x] We need the GOLD prefix to be uncommented since we are ingesting datasets from GOLD
* GOLD: https://github.com/microbiomedata/nmdc-schema/blob/main/src/schema/nmdc.yaml#L45
- [x] https://unk…
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See:
- https://github.com/cmungall/synbio-schema/blob/main/handcrafted/generated/excel/synbio.xlsx
- https://github.com/cmungall/synbio-schema/blob/main/handcrafted/generated/java/synbio.sql
I'm …
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**Describe the bug**
Duplicate in identifier field not failing in online linkml-tutorial.
**To reproduce**
Steps to reproduce the behavior:
1. Go to https://linkml.io/linkml/intro/tutorial03.ht…
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**Is your feature request related to a problem? Please describe.**
https://github.com/mapping-commons/sssom/issues/323
**Describe the solution you'd like**
If I could say: my enum is a "curie…
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**Describe the bug**
Specifying a [LinkML Pattern](https://linkml.io/linkml-model/docs/pattern/) in a **TypeDefinition**, for example, results in a pattern in a JSON-LD `pattern` attribute. But it …
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# Refreshed design for LinkML validation
This ticket serves as a way of capturing the design decisions for enhancing the validation functionality in LinkML.
The main goal of the validator is to …