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Hi @mobiusklein.
I'd like to deconvolute (m/z,intensity) pairs already in a DataFrame. I've looked at the source and it seems I need to create a ScanDataSource. Do you have an example perhaps, or c…
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Dear Prof Rappsilber and colleagues,
I am trying to follow the instructions you described in the manuscript you published in Nature protocols for performing quantitative crosslinking mass spectrom…
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The annotation standard for proteomics experiments are not clear enough for curators.
Problems that are causing issues:
1. Differentiating between a purification and an enrichment
2. What to …
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- Topdown proteomics -- ProteoForm nomenclature
- Richard LeDuc: Richard.leduc@northwestern.edu
- Veit Schwammle: veits@bmb.sdu.dk
- Michael Shortreed: mshort@chem.wisc.edu
- Stefan So…
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SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
Subcellular localization is a main determinant of protein function; however, a global view of cellular proteome orga…
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Hi all,
I want to add Reference Concentration of SLCO1B1 (OATP1B1) transporter protein level in the human I want to use for some simulations. I found the following paper (open access, so attaching)…
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MassBank validation complains on the wrong order of the fields
RMB writes
AC$MASS_SPECTROMETRY: IONIZATION ESI
AC$MASS_SPECTROMETRY: ION_MODE POSITIVE
The validator wants:
AC$MASS_SPECTROMETR…
tsufz updated
5 years ago
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Hi,
run.Reader gives an error while attempting to read a mzML file written by OpenMS tools. I found that the issue is due to the fact that the file generated by OpenMS tools do not explicitly write…
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JUnit tests for org.eclispe.swtchart are missing.
Note: I have written some tests, but not yet ready to share them since package name is not adapted, and also the tests depend on environment at the…
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Greetings
I'm trying to perform quantification with ReporterCLI, and would like to know if there is an example available of an isotope correction factors xml file to give as input. Are these files …