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```python
import io
import re
import sys
import argparse # Added argparse for better command-line argument parsing
from typing import Dict, List, TextIO
try:
import chess
import che…
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I'm working with four large TSVs in VisiData and two of them end up causing parse errors in pandas/polars.
I could first see evidence of this by simply loading the files into VisiData and then imme…
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Hello,
Can you tell me how can i reproduce the results mentioned in the following directory [slue-voxpopuli](https://github.com/espnet/espnet/tree/master/egs2/slue-voxpopuli/slu1) ??
Thanks fo…
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Why not adopt a more powerful CSV parser? I noticed we still use Bytecode OpeCSV parser for SeparatorBasedImporter and CsvExporter, that is old (last version 2.4: 13 Aug 2014 ) and slow. According to …
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Hi, I am trying to use your software for annotating variants according to ACMG criteria. I installed all the modules (apparently in the repo directory) and also the oc modules as described in the manu…
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One of the main benefits to having this be a separate repo with its own table rendering is better versioning/approval/tracking of updates instead of everything coming from the live Google sheet
Als…
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As I was testing my implementation for #2046, I frequently encountered segmentation faults.
I'm working on Windows with Python 3.10.11. These segfaults occur both when starting the program from the '…
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Once again, thanks for this great software, bakta works really well. I have a feature request regarding the CRISPR annotation. As of now, it looks like bakta annotates crispr arrays as something like …
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Hello!
I am using module AlphaMissense with the following command:
```
./vep --plugin AlphaMissense,file=/home/ensembl/VEP/AlphaMissense_hg38.tsv.gz --species homo_sapiens --database -i /home/ens…
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Running the following in `wgd 2.0.22`:
```
wgd viz -d wgd_ksd/global_MRBH.tsv.ks.tsv \
-epk species1_ksd/species1.fa.tsv.ks.tsv -sp speciestree.txt -rw -ap species1_syn/iadhore-out/anchorpoin…