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Thankes for your reply.
Recently, i'm doing my protein by MSMBuilder 2.5. In my protein, there are 5567 atoms, my protein is a protein-protein compound.
When i run 'GetRandomConfs.py -c 1 -f pdb' co…
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@pablopareja: 'Why not having the same requirements as with relationships and being required to specify a node type?'
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I was trying to use ConvertDataToHDF.py and kept getting this error:
IndexError: index (988) out of range (0
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Hi,
Now, i have a problem about ConvertDataToHDF.py command.The following is my fault durning running:
## [root@localhost Chimera4-1]# ConvertDataToHDF.py -t 3 -s c4-18-3.pdb -i XTC
MSMBuilder versio…
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Please open small test case, which uses d3 v3.1.6:
http://jsfiddle.net/2Pe68/1/
Then open web browser console and you will see following logs:
```
transition 0 end
transition 1 start
transition 1 end…
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First,I provide my info about my project:
1, it is a protein
2, there are 134 amino acids and 2184 atoms in my PDB file
my problem is the following:
```
[root@localhost hil-21-2p2-2-MSM]# SaveStruct…
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Hi
When i run :Cluster.py dihedral hybrid -k 100, it appears the fllowing fault :
## [root@localhost hil-21-3a3]# Cluster.py dihedral hybrid -k 100
MSMBuilder version 2.6.0.dev-Unknown
## See file A…