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## Description
I've been using scanpy for a while and installed squidpy in the same conda environment. When I try to import squidpy, it gives an error saying there is no module named anndata._io.sp…
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After getting the data, I did 2 analyses, namely Pagerank Prestige (PRP) and Closeness Centrality (CC) but the number of texts in the "label" column was not all written. Only 16 texts are written. Is …
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Hi, as most of the functions for accessing the properties of a graph in `LightGraph` require that the graph should be a `AbstractGraph`, so could you please give me some suggestions on how to convert …
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hello, Sacha.
I want to ask you errors about centrality.
>` centralityPlot(Network0, include = c("Strength", "Closeness", "Betweenness"), scale = "relative", orderBy = "Strength")`
> Note: rela…
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**Memgraph version**
Which version did you use?
I was using the Docker image memgraph/memgraph-platform:2.11.0-memgraph2.11.0-lab2.8.2
**Environment**
Running docker under Mac.
**Describe t…
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Hello,
I am using your very nice package to run microbiome analysis and I am really liking it!
I have one (maybe naive) question about the `co_occurrence_network` function and the cluster =TRUE op…
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Hi,
Thank you for this useful tool. I applied to some data and I have two independant questions:
1. I used my DEG (between 2 experimental conditions) of the receiver cell type as geneses of inte…
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I'm trying to run nk.community.kCoreCommunityDetection, and got an error AttributeError: 'networkit.centrality.CoreDecomposition' object has no attribute 'cores'. It seems that this line https://githu…
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```r
W checking whether package ‘igraph’ can be installed (2m 7.3s)
Found the following significant warnings:
rinterface_extra.c:3149:3: warning: ‘igraph_incidence’ is deprecated [-Wdeprec…
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```py
def _centralities(self) -> List[int]:
return [
sum(
len(path)
for path in all_paths(self.graph)
# conditions: path l…