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I am not able to run a Dataflow job with the DataflowRunner on GCP (I tried with the WordCount example and a custom dataflow of mine, without success).
My configuration:
- Eclipse Oxygen with Ja…
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When using jms source in a stream it fails to start with following exception:
```
2016-11-24 12:37:15.802 WARN 1 --- [ main] ationConfigEmbeddedWebApplicationContext : Exception encounter…
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**Describe the bug**
As per below feedback, received from @nynymike.
@SafinWasi can add more about his experience with this effort.
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 or class(es)
HaplotypeCaller GVCF mode
### Affected version(s)
GATK 4.1.8.0
### Description
Discussed on the GATK forum: https://gatk.broadinstitute.or…
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Hi, I have some feedback about [this page](https://github.com/hazelcast-guides/standard-deviation-parallel-processing/edit/master/docs/modules/ROOT/pages/compute-standard-deviation.adoc)
I'm gettin…
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What am i missing ?
currently using username and password as creds to github.
Error message:
null
java.net.SocketTimeoutException: connect timed out
at java.base/java.net.PlainSocketImpl.s…
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Generally, extension seem to be activated, and recognizes the ".propswitch" file, shows values in the status bar.
However:
1. Clicking on the status bar widget does not open property selection.…
pfyod updated
4 weeks ago
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Haplotype caller crashing with NULL pointer exception.
gatk version 4.1.4.0
Steps followed:
1. bwa alignment
2. Sorting
3. Mark duplicate
4. BaseRecalibrator
5. ApplyBQSR
6. HaplotypeCaller
…
yuk12 updated
4 years ago
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## Background
I've explored the proverbial *decoupling of compute and storage* in the context of time series data stores (read: Druid) in [this post](https://medium.com/@leventov/design-of-a-cost-e…
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Hi, when I run gatk Funcotator, A USER ERROR has occurred
```
Using GATK jar /export/.conda/envs/wes/share/gatk4-4.0.5.1-0/gatk-package-4.0.5.1-local.jar
Running:
java -Dsamjdk.use_async_io_re…