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hi
I was trying your new progrma and had this error regaridng missing input:
$: /work/ib/BCR/BCR_PRJNA227477/BALDR$ /home/ib/packages/BALDR-master/BALDR --single SRR2126754.fastq.gz
ERROR: Miss…
ibseq updated
6 years ago
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To perform proper germline reconstruction from alignment data we'll need to be able to extract the following information from the CIGAR string:
* Alignment start position in the query (input) seque…
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**[Original report](https://bitbucket.org/kleinstein/changeo/issues/93) by Eric Mukherjee (Bitbucket: [emukherj](https://bitbucket.org/emukherj), ).**
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I have…
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So it appears the yaml file has been replicated from the `specs/` directory into the Python package itself, which I think is a bit of an anti-pattern, as they are already diverged. We should figure o…
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An error indicates:
```
The input BAM MUST be aligned to the set of IMGT/HLA alleles in /gne/home/matthejb/tools/kourami/db
Please use the recommended preprocessing steps explained on the github pa…
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Is it OK to run MHC-PRG with GRCh38 such as Ensembl GRCh38.81?
Can we use the data package of GRCh37 , or should we create the data package for GRCh38?
1)mhc_ref_8_haplotypes/pgf_ref.fasta
extract…
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[Annels NE, Callan MF, Tan L, Rickinson AB. Changing patterns of dominant TCR usage with maturation of an EBV-specific cytotoxic T cell response. J Immunol. 2000 Nov 1;165(9):4831-41.](https://www.ncb…
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I was trying to run the tool (on a 30x whole genome sequence) and it ran fine for a while, but then ended up with this error (on READ LOADING step). The server that I run it on should have 256Gb memor…
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