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We should define various abstract classes for model postprocessing here: https://github.com/kipoi/kipoi/tree/master/kipoi/postprocessing
A user should implement various postprocessing classess (inh…
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According to the scripts given in https://twitter.com/kchonyc/status/899832376955744257 there are two issues:
1. 0.2.0 has a 2x perf regression over 0.1.2 on small workloads
2. pytorch is ~10x slowe…
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Hello, I installed qrefine using the command
phenix.python modules/cctbx_project/libtbx/auto_build/bootstrap.py --builder=qrefine --nproc=8
in the existing phenix-1.13-2998 directory. However …
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The parameters of the transform function are
```
def transform(self, X, perplexity=5, initialization="median", k=25,
learning_rate=100, n_iter=100, exaggeration=2, momentum=0, max_grad_norm=0.05)…
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Email received
> We have been working the qMR software and have found it very helpful for the qMT; thanks to all of you!
> We are trying to obtain qMT maps of the calf muscle.
> I have a question o…
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See images below of the various different icons across the UI at x2 with some comments. This is by no means exhaustive but contains the major icons:
/cc @bpasero
### General comments
- Since color i…
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**Describe the bug**
Because of this https://github.com/qrefine/qrefine/blob/master/cluster_restraints.py#L59 we calculated clustered gradients once in serial and once again with parallel_map. There…
hokru updated
5 years ago
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Dav0815
I've been configuring up this new component, and i have hit a bit of a snag, which maybe only my particular circumstance.
I note there are 4 configurable values.
stop_id & route (whic…
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Please go to Stack Overflow for help and support:
https://stackoverflow.com/questions/tagged/tensorflow
If you open a GitHub issue, here is our policy:
1. It must be a bug, a feature request,…
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## Issue description
If we have a calculation graph where a node includes values with undefined gradients and we de-select
those values, the resulting gradient is wrong.
Let `f` be a function n…