-
I run the Juicer.
and it got split file .fastq{000..010}.fastq.
but when do the align, no output has been created.
The output .fastq.sam it empty.
and I run again, still got nothing.
-
### Versions
- Pi-hole: v5.10
- AdminLTE: v5.12
- FTL: v5.15
### Platform
- **OS and version**: Raspbian GNU/Linux 11 (bullseye)
- **Platform**: Raspberry Pi 3, Model B
### Ex…
scrut updated
2 years ago
-
When running mega_from_bams.sh using .bam files created by other than juicer toolkit (HiCUP here), the $splitdir is not available for generating inter.txt and further.
```
samtools view "$cThreadStr…
-
Hey,
I have a HiC data for which a cocktail of mixed restriction enzymes was used for cut at the following recognition sites:
^GATC, G^ANTC, C^TNAG, and T^TAA. How to code these patterns in the sect…
-
Hi there,
I think the hic file in this link is not accessible:
```
python src/juicebox_dump.py \
--hic_file https://hicfiles.s3.amazonaws.com/hiseq/k562/in-situ/combined_30.hic \
--juicebox "j…
-
**Are you sure this is a bug?**
If unsure, please post your question/situation to the forum first: aidenlab.org/forum.html
**Describe the bug**
running "java -jar juicer_tools_1.19.02.jar dump ob…
-
Dear Olga,
I am running Juicer v1.6 on. a fairly contiguous genome assembly (N50 76.6Mb) using HiC reads generated with the DNase protocol. Thus I ran it with the -s option specifying none, like th…
-
conmmond:
java -jar juicer_tools_1.11.04_jcuda.0.8.jar pre data/test.txt data/test.hic chromosome_sizes.tsv
The content of the file chromosome_sizes.tsv is :
super_scaffold 2493839898
er…
-
Issue reported from Round ID: 35103 (BeeStation Acacia - Roleplay 2)
Reporting client version: 514.1568
Exactly what it says on the tin. I put the pineapples into the juicer, which has a beaker…
-
@mkurz [triggered me](https://github.com/Fyrd/caniuse/pull/6148#issuecomment-1024089140) to check for Safari 15.3 and subsequently finding 15.4, so here is the old issue to add them both :)
I start…