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Hi,
I am writing here to seek your help regarding running the PCF program. I followed all the instructions, got the pgdb, and then run PCF, but it seems to give me errors and crash. Please find bel…
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There's a persisting bug of spurious TER records for protein models which affects the version 22.0.0 as well when using keywords
```
ADD-H SITE=(SALT) SITE=(COO,NH3,ARG(+),HIS(+),SO4,PO4) PDBOUT
`…
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**Describe the bug**
Cannot develop on MacOS Big Sur (11.5.2) on CPU.
**To Reproduce**
Steps to reproduce the behavior:
1. Run `conda env create -f environment-dev.yml`
2. Error output:
```C…
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Hi everyone !
Is it somehow possible to remove the protein groups identified by less than 2 peptides? Or what is the algorithm in DIA-NN for this?
I don't see any columns in "report.pg_matrix" o…
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When predicting hinges on the backbone, it sometimes fails due to infinite lengths. Is this caused by unconnected nodes? Can it be fixed by changing the alpha value? Should there be something in the c…
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wer den weltuntergang NICHT sieht, der liest die falschen nachrichten (blaue pillen)
welche news lese ich? also, wem glaube ich?
**iceagefarmer**
iceagefarmer @ telegram
archiv: https://mi…
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As [reported on Twitter by Keith Robison](https://twitter.com/OmicsOmicsBlog/status/1578468479585644545), `samtools fqidx` by default uses the same line wrapping as `faidx`:
```
$ cat eighty.fq
…
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As a I want in order to .
Link to the list of user stories: https://nlesc.sharepoint.com/:w:/s/DIANNA/EdoppPpmTTBKh0Mq-VdmvM8B_VeTFRzznZ3op-wo1cuBPA?e=qtGO5M
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---
id: vcell
version: 7.4.0.48
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.48/biosimulators.json
specificationsPatch:
version: 7.4.0.48
image:
url: ghcr.io…