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***Problem***
I am following the tutorial/vignette on "**Analyzing PBMC scATAC-seq**" with the provided dataset (https://stuartlab.org/signac/articles/pbmc_vignette) and trying to plot the TSS enric…
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https://mp.weixin.qq.com/s/2LSp-z_igcGZql6AyaumMw
ixxmu updated
11 months ago
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...
I'm trying to simply install cellrank into a conda environment and load it within a jupyter notebook. Seems like package version incompatibilities are present.
```zsh
conda create -c cond…
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Hello,
i'm trying to use your package, but the conversion ArchR2Signac does'nt work.
The error message is : Erreur dans CreateFragmentObject(path = fpath, cells = cells, verbose = FALSE, :
Fra…
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I have a Large Seurat object of single-cell ATAC-seq assay. I need to find a way to shuffle the elements of the Seurat object such that the profiles of each single cell remain intact (i.e., it should …
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https://mp.weixin.qq.com/s/-E9zcB7nM6DIjz6GIzUIwg
ixxmu updated
7 months ago
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Is there a way to obtain celltype labels for an ATAC human bonemarrow dataset using RunAzimuth()? Is there an ATAC-bridge reference in SeuratData?
Or does a custom reference have to be built using …
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Hello,
I’m trying to run the vignette “Integrating scRNA-seq and scATAC-seq data” https://satijalab.org/seurat/articles/atacseq_integration_vignette.html
I’m able to load both modalities.
How…
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https://mp.weixin.qq.com/s/6Sr5cYE-NSGzD25oo_X9Vg
ixxmu updated
11 months ago
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Hi Tim,
# load processed data matrices for each assay
rna