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At the top of the Previous Releases page (https://cellprofiler.org/previous_releases/) it says "Note: CellProfiler versions 2.2 and 3.0 require Java 8".
IMHO I think that this guidance ought to b…
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From issue #40:
"I found in your type II diabetes manuscript, you have did another segmentation to mask the blood vessel and islets in ilastik, and get the distance from cells to the rim. How to achi…
votti updated
3 years ago
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Hi, I have the following errors while trying to install javabridge on macos Catalina Version 0.15.7 :
```
javabridge.c:8122:36: error: implicit declaration of function 'CreateJavaVM' is invalid i…
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https://sentry.io/organizations/allen-goodman/issues/1886701707/?referrer=github_plugin
```
LinAlgError: SVD did not converge in Linear Least Squares
(2 additional frame(s) were not displayed)
...
…
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I'm tracking cells from a time series multi-page TIFF file, in LAP tracking mode, default parameters. In post-processing, it crashes with the error message:
```
Traceback (most recent call last):
F…
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**Describe the bug**
no csv file output
**Desktop (please complete the following information):**
- OS: Mac os 10.13.6
- CellProfiler Version 4.0.6
- installed from source
- followed the wi…
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`Command "python setup.py egg_info" failed with error code 1 in /Users/aidan/CellProfiler/`
I have gone through all of the installation steps on the Wiki and still obtain this error. Any ideas?
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Hi all,
Unsure where to put this as I solved my own problem.
tl;dr: Use openJDK 11 and pip3 with master cellprofiler.
From what I can tell I need to compile cellprofiler from source to be abl…
ctr26 updated
4 years ago
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We found out that while IdentifyDeadWorms works ok in the 2.2.0 version of CellProfiler, the following error occurs in versions 3.1.8. This was reproduced by the developer of the module.
![error_…
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