-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
```
What steps will reproduce the problem?
$ cat test_empty_seq_line.fa
>test1
>test2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>test3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
…
-
Hi,
circminer detected there was a bad read in the fastq file (It's correct. I checked the fastq file) and aborted. Are there options I can set to bypass the abortion? It makes more sense to me to …
-
Such as when nq jobs are spawned in one terminal, then fq -a, then further jobs are added in that same directory in another terminal. This means `fq -a' terminates before all jobs in that directory ha…
-
Hi
I follwed the protocol and checked teh mapping rates of my 50 samples using bowtie and bowtie2 as suggested:
bowtie2 -p 10 -q --no-unal -k 20 -x Trinity.fasta -1 reads_1.fq -2 reads_2.fq \
…