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Hi,
So excited to see this pangenome-based SV caller! Would you please give me some detailed information to use svarp?
1. An alignment file in .gaf format is needed, I wonder which aligner is suitab…
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Hi
I'm using vg tools v1.50.1 "Monopoli"
I've produced a graph from 7 different genomes of the same species using minigraph-cactus.
I've used the indexes produced from minigraph-cactus with `…
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- [ ] change the name to `mgi-p2go-homology.gaf`
- [ ] push to the bucket - only have to worry about updates, no deletes necessary. file is not versioned.
- [ ] rename silver-issue-325-gopreproce…
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## Describe the issue/bug
In Amigo there are some IBA annotations to
Schizosaccharomyces pombe 972h-
## Expected behavior
All annotations should bet o
Schizosaccharomyces pombe
A cle…
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Hi @kltm
This version of snapshot contains TreeGrafter data for 3 species:
- Schizosaccharomyces pombe
- Schizosaccharomyces japonicus
- Xenopus laveis
However, given that these taxa are in the…
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In [`b3d1745`](https://github.com/elfoche/monitoreo/commit/b3d1745b57d82c855881a572dbaed1d8e3467939
), MCU - GAF (http://produccion.cdeluruguay.gob.ar/GAF/forms/login.jsp) was **down**:
- HTTP code: 4…
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Ik zal wel een fout hebben in de config, want ik zie in het logboek *** _mysql_connector.MySQLInterfaceError: Unknown column 't2.start_ts' in 'field list'** kan iemand mij op weg helpen?
Mvg, Patrick
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1. [x] Migrate the total annotations graph from old stats to new stats - "Cumulative annotations by type and year"
2. [x] Remove genes and annotations per paper from old stats - "Annotations/genes fo…
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I thought is was, but it seems not:
CC @krchristie
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**1. What were you trying to do?**
1. I build a 3 genome pangenome using the singularity container and the --chop switch. The 3 genomes are reference + A + B
I generate a large number of sim…