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Dear Samuel,
Thank you so much for this amazing package! it is an amazing way to visualize and analyse scdata!
I am currently running this on my 10x scSEQ dataset, which was preprocessed with the st…
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Excellent work. I have a question about scAtomic's ability to distinguish tumor cells from normal tissue cells. scAtomic used the DEGs of different tumor tissues and matched normal tissues from OncoDB…
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While a hierarchical clustering example is provided in the documentation, proper description of linking methods are missing. To understand the input/output types of hierarchical clustering you have to…
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Hi!
I want to generate a heatmap with de CNV generated by cnvkit and cluster them using hierarchical clustering (Ward.D2 algorithm). My question is about how do you define the bins or the segments …
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Hi,
I'm trying Skott out on a pretty big codebase - looks great so far, but on the webapp display many nodes are layed out one on top of the other.
Is there any parameter that can determine minimal…
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# A list of proposed changes following the May delivery of HDS
These are in addition to the changes in the pull request ailith_delivery3 and to the changes that Hannes made that have yet to be push…
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Many thanks to the authors for opening up the source code and dataset.
I have a question about the dataset. In the Global wind/temp dataset, stations_sorted.npy seems to have sorted the stations. T…
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The community typing section includes now:
- hierarchical clustering
- K-means
- DMM
- link to further examples
In microbiome context, the clustering methosd DMM and CST are generally used in…
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* Pip version: 9.0.1
* Python version: 3.6.1
* Operating system: Microsoft Windows [Version 10.0.15063]
### Description:
I was trying to install two Python modules, NumPy and SciPy, NumPy inst…