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HI thanks for gridss.
I may have not understood everything. I try to do a Trio analysis (3 bam files from Father, Mother, Child). So I run gridss with this parameters based on your example:
java -ea…
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Hi again,
I'm trying out the `-defaults` option for dxWDL `compile` and I am attempting to set up the json as described in the dxWDL readme:
```
{
"assemble_denovo_with_deplete.deplete_taxa.…
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Hi guys,
I got an error message trying to generate a coverage report for TestID1063. This is the re-analysis sample, so the failure might have something to do with that. Previous analysis is TestID…
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We need to do the following:
- Prepare your slides
- Prepare tutorials to help you delivering your presentation effectively
- Prepare your pipeline
- We need to list tools we will use in all …
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Dear Developer,
I'am facing error when using the python version of MAnorm. I'm using 3-columns bed files for peaks input since the peaks are broad peaks called by MACS2, no summit coordinates can b…
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It would be nice to install into the Beacon Network a module that translates from:
- dbSNP IDs
- HGVS coordinates
- LRG
- etc.
into the genomic coordinate system so that we can issue queries to B…
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**Submitting author:** @cokelaer (Thomas Cokelaer)
**Repository:** https://github.com/sequana/sequana/
**Version:** 0.4.1
**Editor:** @pjotrp
**Reviewer:** @bow
**Author instructions**
Thanks for su…
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I would like to request that this "old" samples be process via DNA Nexus using Pan1464 as we have been asked to look at TTN;
NGS118a_07_164559_IB_CM
FASTQ files are on Pluto
Thanks
Rachael
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BED file for Pan1456 for is missing 2 exons of COL4A5.
Genomic coordinates for COL4A5 Exons 42 and 43 are:
COL4A5 (LRG_232t2):
Exon 42
start c.3791 NC_000023.10:g.107913458G>A
finish c…
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it took so much time maybe around 5 minutes to do migration process. i have 60 aggregate roots and 40 more snowflakes. do you know how to speed up this process?
thanks