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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat 8.8
### Workflow Version
23.10.1
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No…
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I was trying to get onto the second layer of an HPC after SSH-ing with some Slurm command (srun), as was generally described in #1722. I tried the newest `RemoteCommand` from the Pre-release version …
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Hi again, I have some more questions about Lmod and EasyBuild, and some concerns that start to arise as I am discovering this technology (note that I am not a sysadmin originally, more of a dev who do…
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using smoove 0.2.7
GFF="Homo_sapiens.GRCh38.105.gff3.gz" # http://ftp.ensembl.org/pub/release-105/gff3/homo_sapiens/Homo_sapiens.GRCh38.105.gff3.gz
smoove annotate --gff ${GFF} ${outdir}/${SAMPL…
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I am the system administrator at a smallish HPC site. We have a research group that would like to use `srbench`. We are, unfortunately, currently stuck on RHEL 7 (ancient) for the host operating sys…
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Dear all,
we need to install icommands on the login nodes of our HPC clusters:
The login nodes have these OS/architectures:
- Intel Xeon Platinum 8276-8276L (x84_64) with CentOS 8.3
- IBM Pow…
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### Description
I pulled the current version of the Docker container as a Singularity image for use on our HPC. I'm using the example Docker to run this but cannot on the HPC for obvious reasons. I…
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### Steps to reproduce the issue
```console
$ spack spec -I
raider08.afrl.hpc.mil:/p/work1/galarowi/spack/ spack spec -I survey@1.0.9 %gcc@12.2.1 +mpi ^openmpi@4.0.7
Input spec
-----------------…
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**Describe the bug**
Python crashes without any error when calling `ants.registration` to rigidly register one MRI image to another. This only occurs with two specific images in my dataset.
…
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### Description of the bug
Hi,
I ran the pipeline successfully, but in results folder I can not see any `deseq2` output:
```
results> ls -1
fastp
fastqc
genome
multiqc
pipeline_info
star_sal…