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**Snakemake version**
Note the Snakemake version for which you experience the bug.
Always make sure to try out the latest version before creating a new bug report.
**Describe the bug**
A cle…
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**Is your feature request related to a problem? Please describe.**
Updating of depending rules takes really long (and doesn't seem to scale linearly) with many targets. As an example: Take the checkp…
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**Disclaimer**
I've already described this case also on StackOverflow [here](https://stackoverflow.com/questions/73547671/snakemake-solving-dependencies-between-modules). However, since I believe i…
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**Is your feature request related to a problem? Please describe.**
I'm running a test in a github action using `snakemake/snakemake-github-action@v1`. The one test that's failing has no error outp…
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### Conda environment check
- [X] I have tried using the `osemosys-global` conda environment.
### Current Behavior
If you add `CCG` as a `no_invest` technology, an extra `PWRCCGxxxxx00` technology …
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Hi Snakemake team,
**Is your feature request related to a problem? Please describe.**
I created a NGS processing pipeline on a slurm hpc so my colleague can run it and then we share the results/…
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Dear developers,
I have a question regarding the `reana-client upload` feature.
Is it already possible or is it planned to execute something like:
```
reana-client upload s3://.../my-s3-data…
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I would like to use LACA for shorter amplicons (600 bp) from ONT sequencing.
Can you provide the following options in the laca init so that the config file can work with alternative sequence input…
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## Describe the feature you'd like to see
Add codecov coverage for verifying the ratio of code that is actually tested by the CI