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Should we replace the `GzDecoder` from flate2 with `MultiGzDecoder` (which would also support [BGZF](https://docs.rs/flate2/1.0.16/flate2/bufread/struct.MultiGzDecoder.html))?
Are there other conse…
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> Hey all, Im trying to install pysam on mac OS. I was required to install pip which did but when trying to install pysam with pip i get the following lengthy error. Please help. Thanks
`$ pip instal…
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http://biopython.org/wiki/SeqIO
We should consider an exit message explaining this issue or write to a temporary file because SeqIO.index (annoyingly) does neither. This affects transform.sort_name …
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Hello,
I'm trying to install StringTie to the Virtual MAchine with Ubuntu version: 18.04 following the instructions on the page: http://ccb.jhu.edu/software/stringtie/
What I have done so far:
1)…
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Hi,
I'm stuck at do 'make' in the Mach2VCF directory. The output message including errors is the below:
```
make[1]: Entering directory '/home/awakumaya/Mach2VCF/src'
make -C ../Library/libSta…
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for using the program in pipelines the naming convention of positive_ and negative_ is not practical.
It would be great that the output is in 1 (one) file like the input and the user can specify it…
visze updated
4 years ago
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Hi,
My system has 64GB of RAM and 4GB GDDR5 M1200 Nvidia GPU.
Please help resolve and run the program.
I am trying to do "make" from inside the downloaded master folder.
But it gives error …
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@tomwhite
@fnothaft
@ryan-williams
@jacarey
@tfenne
@lbergelson
@cmnbroad
@droazen
@magicDGS
@vdauwera
@cseed
Sorry to @-mention you all here on this issue, but unfortunately I only …
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`libz-sys` should have a feature to use an alternative zlib implementation, such as `zlib-ng`. That would reduce the problem such alternative implementations currently have, of potentially ending up w…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
(py3k) C:\Users\Splab-PC\Dropbox\python\biopython>Python
Python 3.6.3 |Anaconda…