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### Quesiton
During training only, I encounter a `PhysX error: PxRigidBody::setMass(): mass must be non-negative!` error despite having non-negative/non-zero masses. The training does start, howeve…
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Hi! I am testing the pipeline on the testing set using the singularity image ctat_mutations.v3.0.1.simg. When I ran the comman I got the following error at the end of the pipeline:
```
[2021-05-25 …
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Hello,
Iam using Trinotate LOAD_custom_blast for loading my blast results and it completed successfully. But i wanted to make report from that but it showing some errors
command which i used to l…
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I have been getting the following error with my data and I am not sure what the problem is. Can someone give me a little education?
```
--------------- Inchworm (K=25, asm) ---------------------
…
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Hi,
we have observed a strange Trinity behavior during the Salmon stage. A brief note about our procedure: we are normalizing the reads before running trinity so that trinity gets pre-normalized re…
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Hi Brian,
Long time user, first time caller.
I used to run lots of Trinity 1 assemblies, but haven't for a few years. In the interim, submitting the parallelizable steps has changed. I am used t…
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Hi,
I had a strange de novo assembly result from two version Trinity. The input is a tiny bam file (317 KB), only reads matched with a specific CDS are included. The idea is to assemble these reads…
lincw updated
3 years ago
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Hi,
I have an interesting issue that I am running into with some old SuperMicro Servers. I have got a few old SuperMicro servers where system serial number is set to 1234567890 ( fun ... , isn't …
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Hi,
I have about 48 RNA-seq datasets. For 8 of these datasets, I am getting error of the following form, while rest of the datasets went without any such errors.
cat: /vf/users/pals2/eye_evolution/d…
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Hi B,
background on my work. im a doing 8 tissues from triplicate plants from 2 species.
i have realized after running trinity that there is a salmon_outdir in the assembly directory where the r…