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Hi,
In the documentation, I mean. The example code there actually already shows this ;)
Thanks!
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Hi Jörg,
maybe you can help me to understand this part of the code (especially line [194](#L194)):
https://github.com/seqan/seqan3/blob/7fbbefe94b542499ad58bd9293092fe9b84b2a9e/include/seqan3/al…
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W: seqan-apps: manpage-has-errors-from-man usr/share/man/man1/micro_razers.1.gz 47: warning: macro `N'' not defined
N:
N: This man page provokes warnings or errors from man.
[…]
N: Other …
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1. Read through the general documentation on alphabets and see if you understand what's going on: http://docs.seqan.de/seqan/3.0.0-master-user/group__alphabet.html
2. Read through the general documen…
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I don't know why this wasn't ccaught by travis nor Jenkins but on the current master branch I get an ICE in the pairwise alignment module
```
/srv/public/seqan3/test/unit/alignment/pairwise_alignm…
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Hello,
As a feature request for `yara_mapper`, could support for specifying paired end reads as a single stream in interleaved FASTQ and/or unaligned BAM formats be added? E.g.
```bash
# singl…
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In SeqAn we will need/want recursive views quite often, or more precisely, views that modify the innermost most range, not the outer range.
This is because we often operate on collections of string/v…
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There are still some member variables that do not follow the naming scheme:
- `BamAlignmentRecord::rNextId` -> `BamAlignmentRecord::rNextID`
- `GenomicRegion::seqId` -> `GenomicRegion::seqID`
Also, a…
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Hi.
I did not find any relevant issues, sorry if this has already been discussed.
I am trying to write the alignment store of a fragment store into a sam file with:
`std::ofstream samFile("addres…
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I'm dealing with BAM files containing many reads mapped to a single long reference sequence (the human genome). I would like to use the nice SeqAn functions `toSourcePosition()` and `toViewPosition()…