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Biosamples are normally from a tissue sample that can be named. This data should be represented as a named field of a Biosample message, i.e. `tissue_type`. I suppose one might use something like the …
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We want to load the `biosampleIndex` that @Tobi1kenobi has created in #3445. Actions:
- [x] Create a version of the dataset in JSONL (pyspark `write.json`)
- [x] Provide the schema of the dataset in …
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We need a general discussion on modelling pathological entities across OBO and in particular phenotype ontologies.
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replaced-by: in-taxon
Add `Functional` characteristic to in-taxon
also consider: relabeling in-taxon to in-organism
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I am using the 0.5.0 SNAPSHOT version of the ELK reasoner on Protégé. When running ELK on Protégé on the envo release file, I got some inconsistent classes that robot did not pick up during the releas…
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moved from https://github.com/OBOFoundry/OBOFoundry.github.io/issues/906
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While checking on an older issue, I found that we're getting "gene" nodes from phenio:
category | in_taxon | id | provided_by |
|--------------|----------|------------------|----…
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_From @cmungall on August 25, 2015 21:48_
cc @hdietze @kltm
We currently have spatial disjointness axioms, e.g.
```
(partOf some nucleus) DisjointFrom (partOf some cytosol)
```
This will correct…
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To sync OORO and radont, we need to include the following OORO "Patient" concepts in radont
- Patient MRN
- Anonymized Patient Identifier
- Data Set Identifier
- Date of Birth
- Year of Birth
-…
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Specific markers are linked to very general cell classes, e.g. these are recorded as generic markers of epithelial cells
![image](https://user-images.githubusercontent.com/112839/190896117-15871c6…