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Hello,
I have a problem with reading the slidedata object saved as .h5 file.
This is the code used to write the file to disk (works fine):
`slidedata.write('data/slidedata/tile1_processed.h5')
`…
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Loading images into Classifier on a machine without Java warns the user that Bioformats uses Java, though CPA will still work. However, when the "OK" is clicked in that warning dialog, CPA hangs.
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See [QA 30058](https://www.openmicroscopy.org/qa2/qa/feedback/30058/) .
Unfortuantely I couldn't find out any more details. Bioformats tool `showinf` opens the file, no errors (although doesn't show …
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Hi,
when I open a stack and then select crop, I get:
```
Exception in thread "Thread-16" java.lang.IllegalArgumentException: invalid range properties
at javax.swing.DefaultBoundedRangeModel.(…
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I'm trying to reformat some regular TIFF images into a multi-series or multi-file OME-TIFF. Here each series should be a field of view (FOV), with x and y coordinates of stage position. I tried doing …
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@NicoKiaru
If people open for example a `.lif` or `.czi` file the content can be very complex, with many different images of different dimensions.
We need to come up with a GUI (or maybe even a…
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Hi everybody,
I have IHC images to analyze and it has high DAB background.
Probably because of the background, 'Cell detection' function does not work at all to detect any cells in the image eve…
r5ljq updated
3 years ago
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Hi there,
Thanks for bringing such a good python library. I am new to oib image files, and currently wanting to extract the metadata from several oib files using python to either a human-readable f…
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Hi John.
The tiff format should be able to support saving pyramids, I've asked that question here : https://github.com/ome/design/issues/104
in pyvips, I am able to save a 2D image with a pyrami…
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I noticed you use `System.out.println()` in `Consumer`s a lot to do logging:
https://github.com/bigdataviewer/bigdataviewer-playground/blob/ccc9240b2943320dda5f4e9b2fc1f2c7ca6aa32c/src/main/java/sc…