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Hello pyemma users,
Since I am new to pyemma. Can anyone help me to build and customize the feature for global angle (dihedral) calculations using the center of mass atoms ?. Please share an examp…
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I'm thinking of having an option to use Torsion Drive/xTB to do the geometry optimisation in Torsion Scan.
I was thinking of making such an interface
Where the input would be the same as the `qf…
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The clustering used to calculate the conformational entropy should be done by dihedrals and not by RMSD. New script should me made to cluster with dihedrals
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I'm testing the xTB routine and for most molecules (>95%). The xTB hessian behaves fine (give similar energy to PDB0-D3(BJ)/def2-TZVP). However there is one molecule that gives vastly different energy…
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Hi there,
I was doing the tutorial and ran the command :
prepare_dual_topology.py --config_file=step2.ini
After this I received the error message below. Do you have an idea what could be cau…
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## Tutorial description
Write a tutorial or series of tutorials on bonds, angles, dihedrals, and constraints.
## Section
Maybe right after after "Introducing Molecular Dynamics"?
#…
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### 路由地址
```routes
/acs/journal/:id
```
### 完整路由地址
```fullroutes
acs/journal/accacs
acs/journal/jacsat
```
### 相关文档
https://docs.rsshub.app/zh/routes/journal#american-chemistry…
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## Description
Add more benchmarks to the repository.
## Motivation and context
We need benchmarks to make performance comparisons between HOOMD releases going forward and to evaluate per…
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I'm trying to look on our histograms and on Ramachandran plot and I'm worried if it is good that we change the sign. If yes - which sign is correct... I really have no idea why we get in Yasara someti…
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As the summary says...
For possible follow-up tickets:
- simplicial abelian groups and Eilenberg-Mac Lane spaces.
- effective homology and related computations that Kenzo can do but we can't yet.
…