-
Hi @AhmedElsherbini. I came across your repo while trying to find a way to download dataset from HMP database. However, I am getting error when I am trying to download the data in the example_manifest…
-
Dear All,
I'm trying to create my own reference.
I first used a local fasta downloaded from Ensembl, but the sequence didn't display in the browser and the file was fully loaded as you can see in …
-
An ongoing list of fixes/tweaks to existing features.
---
### Comments with open items :construction:
- [2021Jan22](https://github.com/plantinformatics/pretzel/issues/216#issuecomment-7651714…
-
Hi, guys!
I applied the `flatfile-to-json.pl` pipeline in my GFF3 file, apparently it was generated without problems. I created a new organism filling the usual fields, but after click on button, …
-
Hi, I am facing an issue trying to pre-process my transcript gene list using hg38 as a reference:
`Rscript download_tx.R --gene_list "gene_list.txt" --out_refseq "output_refseq.txt" --out_tx_splice…
-
## Background
`GenBank` format ("GenBank Flat File Format") is a genomic format that describes nucleotide sequences and their protein translations. `GenBank` file (`.genbank`, `.gb`, `.gbk`) is a s…
-
Hi, thanks for this excellent software. I have a genome browser working with JBrowseR but when I add the text_index option to the JBrowseR function it just outputs a white screen. Here is my code:
``…
-
We should remove the reference genome field and replace it with an entry from the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7408187/) resource.
The relevant information to store …
-
It would be nice to include a list of organisations that use Cytoscape.js in the docs.
Please include:
- Organisation name
- Link to organisation site
-
I'm currently struggling to work out true conversion rates of an experiment and some of the mutiqc reports (i.e. rates and UTR rates) show much higher than expected conversion rates even for the contr…