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@will-moore @joshmoore @constantinpape
What is meaning of the channel dimension for the label images?
I could imagine:
1. It _must_ be a singleton dimension, where only channel `0` exists
2…
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## 🐛 Bug
I'm trying to make example data available from zenodo.org. napari doesn't load it correctly. I also can't tell which plugin loaded the data. It's not AICSImageIO, because I have reported a…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Bug description
I'm trying to train a new network. I got the program to extract the frames, but when I i…
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Hi,
I also noticed that when loading machinelabels.csv with napari, the labels do not line up with the images, as the extracted points from DLC are not in image order, but the images loaded are. He…
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> The speed of analysis will improve if we don't have to do the dimensionality reduction for each FOV.
https://github.com/czbiohub-sf/napari-iohub/pull/13#issuecomment-2352089033
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I’m working on fine-tuning micro-sam on some fluorescence imaging of myotubes. For prototyping my pipeline, I’ve downloaded the image data associated with the [MyoCount paper [Murphy et al. 2019]](htt…
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When selecting both segmentation models megaSeg and megaSeg lite and selecting an input image, the prediction runs for several minutes and then finishes with no segmentation prediction displayed or ge…
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## 🚀 Feature
The plugins dialog could be simplified if the plugin errors were displayed as part of the notification manager?
## Motivation
Simplify the UI, plugins menu and dialogs.
--…
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Create a converter for [btrack](https://btrack.readthedocs.io/en/latest/) output files to the cell tracking challenge format.
## Output files
Btrack outputs to an HDF5 file containing various outp…
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The render plugin is a good starting point to play around with different ideas. Wonder if we should have an 'experimental' branch maybe? /cc @jburel @dgault @francesw
Here's a first attempt, kind…