-
Hi!
Seems like the superpositioning is crashing. I had a testset of ~60 structures and when I reach this website:
`https://gproteindb.org/structure/superposition_workflow_results/full?
`
I get…
-
To reduce unnecessary dependencies, remove all scripts not in Manifest.in and their unique dependencies and separate them into a separate repository.
-
The README says BAMnostic is *a pure Python, OS-agnositic Binary Alignment Map (BAM) file parser and random access tool.*
Are you intending to support BAM output, or is this only possible though a …
-
### Setup
I am reporting a problem with Biopython version 1.78, Python version 3.7.8, and Linux-4.19.0-13-amd64-x86_64-with-debian-10. as follows:
### Expected behaviour
Bio.PDB.PDBParser sh…
-
Hi.
I am aligning two long sequence(seq1 is 5wbp, seq2 is 10wbp) using Bio.pairwise2, but there is an error:
`Process finished with exit code -1073741819 (0xC0000005)`
Can't Bio.pairwise2 align …
-
Hello,
I followed the install instructions and got up to the point where I try to install evcouplings.
pip install evcouplings
Collecting evcouplings
Using cached evcouplings-0.1.1.zip (281 k…
-
Hi,
i am trying to install CAP2 by following the steps provided [here](https://metasub.github.io/CAP2/quickstart.html). the installation is throwing the following error which i am not able to fix.…
-
It looks like MEME now skips over providing sequences from the training set when the number of sequence is greater than the argument to `-brief` (1000 by default), which is documented to do the follow…
-
Hi Matt,
I've been trying to run get_seq_lengths.py and I keep getting this error:
Traceback (most recent call last):
File "/Applications/HybPiper/get_seq_lengths.py", line 68, in
seq_l…
-
## Description
Augur pins jsonschema to version 3 in [setup.py](https://github.com/nextstrain/augur/blob/5d04da22723a308069b8b0ea457beb3f212b5e67/setup.py#L60) and [Bioconda recipe](https://github.…