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Dear @ChiLiubio,
Thanks for this game changing R package.
I am trying to import a phyloseq object using `file2meco::phyloseq2meco`.
My initial phyloseq object contains ASV sequences `refseq() `…
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Hi,
When running `mikado serialise` with BLAST tsv results I get error: `Cannot use a compiled regex as replacement pattern with regex=False`
Serialise log:
```
2024-06-13 09:30:05,071 - seria…
jolbi updated
1 month ago
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Dear authors,
I got the error at prothint step.
```
# Thu Mar 21 12:48:30 2024: Calling prothint.py...
# Thu Mar 21 12:48:30 2024: starting prothint.py
/data/scratch/mpx586/github/gene_predic…
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Hello,
I ran the test data in the login node of HPC cluster:
```
nextflow run /public/home/zyqi/pan-TE-analysis/GraffiTE/GraffiTE/main.nf \
--assemblies assemblies.csv \
--TE_library huma…
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Hi,
I was trying to test run camisim using the docker image, but I ran into some problems. I tried a from profile simulation running metagenome_from_profile.py with the mini.biom file just as descri…
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Hi,
Thank you for great tool!
I have encountered problem with sprayandpray.
When I run:
spray-and-pray.py -g assembly.fasta -out endosymbionts_out -cd 0.5 -L 1000000 -perc 50 -ref /BLAST_d…
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![image](https://user-images.githubusercontent.com/74632866/166883365-f0bbf68e-5453-4e0a-adfd-6b801f9ad982.png)
Variables are all over the place and some functions are guaranteed to error when called…
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I recently updated to framework commit `ca788d8941abc469ee6cac70daff3dfd67d9e47e` (engine commit `c9dda84396f287720d82249b0a1571e0ad9b6a82`) on the main branch and triggered a windows build of an app.…
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MS-GF+ seems to crash while analyzing data and gives following error message:
MS-GF+ Release (v2017.01.27) (27 Jan 2017)
Loading database files...
Warning: Sequence database contains 74 counts of…
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BCALM doesn't crash nicely when the input is an incorrect fasta file. The current error message is:
```
>cat blin.fa
adfad
> bcalm -in blin.fa -kmer-size 3
BCALM 2, git commit e9ba83c
setting st…