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I am preparing data for HMSC-HPC. The model implements GPP at the European scale (52K sampling units) for 142 species and 9 covariates and
```
M_Init
# Hmsc object with 52729 sampling units, 142…
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Hello,
I am using the STAR aligner to align bulk RNA-seq samples generated from Smart-Seq-2 protocol using the Nextera XT Dna library prep kit.
This is how I am generating the genome index and…
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Hi,
I'm having problems compiling filterBam
```
mkdir -p bin
cd src && make CC=cc CXX=g++
make[1]: Entering directory `/rds/user/fc464/hpc-work/SoftwareTwo/augustus/src'
echo "-Wall -Wno-sig…
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I had this bit written up for the docs on the EESSI test suite, but neither of these options doesn't seem to work as intended with our GROMACS/TensorFlow tests:
``````markdown
#### Filtering by de…
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Snakemake may not be the best workflow manager for HPC; we're teaching it because it is broadly accessible, and the lessons can be broadly transferrable.
Include an episode at the end to discuss th…
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### Checklist
- [X] I added a descriptive title
- [X] I searched open requests and couldn't find a duplicate
### What is the idea?
Conda is pretty heavy on shared HPC file systems. I thought, reduc…
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**Steps to reproduce:**
1) Write these commands in a Windows console:
```
git clone https://github.com/dexter/dexter
cd dexter
git submodule init
git submodule update
mvn install
```
**Res…
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Build integration of @pyatsysh FNO work into the IceNet pipeline.
The goals are as follows:
* [x] Get the current demo notebook running, figure out dependencies such that it runs.
* [x] Get it …
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```roles/hpc-cloud/roles/common/files/sshd_config```
is less secure than
```roles/ldap/templates/sshd_config```
There are a lot of differences. E.g. ```roles/ldap/templates/sshd_config``` has ```Pa…
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# Setting up CPU env - Part 2 - Programming 101
Getting started with HPC Setup. Part 2: Configure conda enviornment, setup R and python, configure Jupyter kernels and start Jupyter Lab.
[https://cod…