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Hi,
Great tool, thanks first and foremost.
Was looking to use data from Allen brain structures, which doesn't map to any areas in the atlas. It would be useful to either have a "map from allen"…
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Hi,
- I have pre-processed my fMRI task data with fMRIPrep and obtained the output dtseries in cifti (fsLR) space.
1. I visualised output dtseries in wb_view and it seems to be registered with …
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in Sheet Full GIF Map for Review
This was resulting in duplication of GIF pt #s values when the following section of Q_L was being run:
```python
fixed = all_combined_gifs.pivot_table(
…
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As reported @ https://neurostars.org/t/connectome-mapper-3/16856, this raises the following error:
```
User: root
Group: root
> BIDS dataset: /bids_dir
> Subjects to analyze : ['0010']
> Set $FS…
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`result['cerebellum'] = [72, 73, 74]` within `SemiologyVisualisation` module:
```python
def getLobesMapping(self):
from mega_analysis import gif_lobes_from_excel_sheets
result = …
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I am not sure if you have already implemented it, it is also nice to get different measures out of the set of timeseries in a ROI, other than the `mean`.
In region.py, you calculate the `mean`:
https:…
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Is there a way to specify what functional networks to color/highlight in a brain figure using hcp.view_parcellation(mesh_sub.inflated, hcp.ca_network)? For example, if analyses identify specific netwo…
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hi
i have a question on how can i add surface roi mask to the cosmo_surficial_neighborhood?
i can just add a volumetric mask at cosmo_fmri_dataset level before neighborhood level but i have very ni…
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Hi! First of all, thank you so much for providing the .gcs files of almost all the atlases that are contained the .figshare links. I usually just use these files to run a specific parcellation on indi…
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I have this nice image from the [parcellation_fragmenter project](https://github.com/miykael/parcellation_fragmenter):
![fmriflows_logo](https://user-images.githubusercontent.com/950321/44617015-9af4…