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**Describe the problem concisely**.
RNA-Seq provides quantitative measures of RNA abundance in the sequenced cell types. However, a major question of interest is typically quantitative: is the protei…
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Hi, I have some questions about using RMATS
1. If I only want to test how much AS is contained in a sample (containing 3 biological replicates) instead of differential variable shear, the followin…
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Hi, I ran the example command
tombo resquiggle path/to/fast5s/ genome.fasta --processes 4 --num-most-common-errors 5
and received the following error:
[15:45:46] Loading minimap2 reference.
…
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**User story**
As NPG we would like an extra "Contaminated Human Data Access Group" field on the New Study Page so that access to the "likely human" read data that NPG already creates separately.
…
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Hi,
I am trying to generate a .loom file out of 10X fastqs using the fromfq command. Everthing seems to run smoothly up to saving the loom file (everything prompted as expected, "INFO - Saving" inc…
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Dear all,
We are analyzing some patients with this fantastic program and trying to learn the meaning of the results we obtain. On the graph we obtain a disperse point pattern (see image below):
…
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I noticed that kazu changed the input text. I'm curious how it made this mistake and how to prevent it.
To recreate: I passed in a text block that contained the text "The CFIm25 deletion leads …
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Hi Akdes,
I have been working my way through the pipeline and have run into an issue that I have been trying to work through the past few days with no luck.
I have no issue with all the preceding …
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https://mp.weixin.qq.com/s/zbQbrMDTg0nw9J_inPuL7A
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### Context
The `bhki` community would benefit from the recommended data transfer workflow proposed in #4213 to get started with analysing ~GBs of `.fastq` files for RNA sequencing.
### Proposal
Se…